PGC2 Schizophrenia Z-scores, 3 Mb Window on Chromosome 10

Association Z-scores for 721 variants in a 2.99 Mb window on chromosome 10 (103,008,802-105,997,104), from the Psychiatric Genomics Consortium's second schizophrenia GWAS wave (PGC SCZ2).

Usage

data(PGC2_3Mb)

Format

A data.frame with 721 rows and 6 columns:

rsid

dbSNP rs identifier.

chr

Chromosome; 10 throughout.

bp

Base pair position.

a1

Reference allele.

a2

Alternative allele.

z

Association Z-score.

Details

The small window makes this the example input for the functions whose cost grows with the square of the number of variants in the region: computeLD and dist.

References

Schizophrenia Working Group of the Psychiatric Genomics Consortium (2014). Biological insights from 108 schizophrenia-associated genetic loci. Nature 511(7510):421-427. doi:10.1038/nature13595

Examples

if (FALSE) { # \dontrun{
data(PGC2_3Mb)
str(PGC2_3Mb)
} # }