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PGC2_SCZ_ANC_Prop
- PGC2 Schizophrenia GWAS Ancestry Proportion
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afmix()
- Calculate population weights using RAF
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computeLD()
- Compute LD for measured SNPs from mixed ethnicity cohorts
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cpw2()
- Calculate population weights using RAF
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dist()
- Direct imputation of summary statistics for unmeasured SNPs from ethnically homogeneous cohorts
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distmix()
- Direct imputation of summary statistics for unmeasured SNPs from mixed ethnicity cohorts
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fiqt()
- FDR Inverse Quantile Transformation (FIQT)
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gauss-package gauss
- A short title line describing what the package does
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jepeg()
- Joint effect on phenotype of eQTLs/functional SNPs associated with a gene
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jepegmix()
- JEPEGMIX: gene-level joint analysis of functional SNPs in cosmopolitan cohorts
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prep_qcat()
- Prepare datasets for QCAT analysis
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prep_recessive_impute()
- Prepare datasets for Recessive Imputation
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prep_zmix()
- Calculate population weights using association Z-scores
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prep_zmix2()
- Calculate population weights using association Z-scores
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prep_zmix3()
- Calculate population weights using association Z-scores
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prep_zmix4()
- Calculate population weights using association Z-scores
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prep_zmix5()
- Calculate population weights using association Z-scores
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qcat()
- Testing causality of variants from ethnically homogeneous cohorts
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qcatmix()
- Testing causality of variants from mixed ethnicity cohorts
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simulateLD()
- Simulate LD for user provided SNPs from mixed ethnicity cohorts