Package index • gauss

All functions

JEPEG_SNP_Annotation.v1.0: JEPEG Functional SNP Annotation, version 1.0
PGC2_3Mb: PGC2 Schizophrenia Z-scores, 3 Mb Window on Chromosome 10
PGC2_Chr22_ilmn1M_AF1: PGC2 Schizophrenia Allele Frequencies, Chromosome 22
PGC2_Chr22_ilmn1M_Z: PGC2 Schizophrenia Z-scores, Chromosome 22
PGC2_SCZ_ANC_Prop: PGC2 Schizophrenia GWAS Ancestry Proportion
PGC3_SCZ_ilmn1M_Z: PGC3 Schizophrenia Z-scores, Genome-wide
afmix(): Calculate population weights using RAF
computeLD(): Compute LD for measured SNPs from mixed ethnicity cohorts
cpw2(): Calculate population weights using RAF
dist(): Direct imputation of summary statistics for unmeasured SNPs from ethnically homogeneous cohorts
distmix(): Direct imputation of summary statistics for unmeasured SNPs from mixed ethnicity cohorts
fiqt(): FDR Inverse Quantile Transformation (FIQT)
jepeg(): Joint effect on phenotype of eQTLs/functional SNPs associated with a gene
jepegmix(): JEPEGMIX: gene-level joint analysis of functional SNPs in cosmopolitan cohorts
prep_qcat(): Prepare datasets for QCAT analysis
prep_recessive_impute(): Prepare datasets for Recessive Imputation
prep_zmix(): Calculate population weights using association Z-scores
prep_zmix2(): Calculate population weights using association Z-scores
prep_zmix3(): Calculate population weights using association Z-scores
prep_zmix4(): Calculate population weights using association Z-scores
prep_zmix5(): Calculate population weights using association Z-scores
prep_zmix5_sup(): Calculate population weights using association Z-scores
qcat(): Testing causality of variants from ethnically homogeneous cohorts
qcatmix(): Testing causality of variants from mixed ethnicity cohorts
simulateLD(): Simulate LD for user provided SNPs from mixed ethnicity cohorts
zmix(): Estimate ancestry proportions from Z-scores