It uses an interval parameter to determine how SNPs are selected for analysis. If interval is not provided, it defaults to 1, meaning every SNP is considered. SNP Pairing: Pairs each SNP with every other SNP in the subvector (snp_subvec) If Interval=1000, it pairs SNP_0 with SNP_1000, SNP_0 with SNP_2000 ... and SNP_1000 with SNP_2000, SNP_1000 with SNP_3000 ...
Usage
prep_zmix(
input_file,
reference_index_file,
reference_data_file,
reference_pop_desc_file,
interval = NULL
)Arguments
- input_file
file name of input data containing rsid, chr, bp, a1, a2, and z
- reference_index_file
file name of reference panel index data
- reference_data_file
file name of reference panel data
- reference_pop_desc_file
file name of reference panel population description data
- interval
stepping distance within the SNP vector for selecting the first SNP of each pair.