Calculate population weights using RAF
Usage
afmix(
input_file,
reference_index_file,
reference_data_file,
reference_pop_desc_file,
interval = NULL
)Arguments
- input_file
file name of input data containing rsid, chr, bp, a1, a2, and af1
- reference_index_file
file name of reference panel index data
- reference_data_file
file name of reference panel data
- reference_pop_desc_file
file name of reference panel population description data
- interval
number of non-overlapping SNP sets used in calculating population weights